API has recently upgraded the units to feature regular word clock I/O [self terminated]. You can send your unit to API and they can install the clock board for a nominal fee. They only do this modification direct, and in house. Its worth the dough to get everything working correctly.
It's going to depend on what receiving digital interface you are using. In many cases, you can easily make the A2D the master clock of a 002 without BNC [which will be more than fine to do with any system], by selecting the chosen digital port as the clock source in the software. "Superclock", should be called "stupidclock", because there are very few devices that use it.
The Apogee Big Ben, has the ability to sync using regular WC, as well "StupidClock" can be assigned to WC outputs 5/6. Might come in handy with a long chain of digital gear and a inferior system [without regular BNC sync I/O]. You can also use the BB as a digital distribution device, where it takes signal from the A2D from the AES feed, and re-distributes it to all your gear, while it serves as the master clock source of your PT LE system, via SPDIF connection.